[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000265 bp)...
[M::process] read 555560 sequences (80000257 bp)...
[M::mem_process_seqs] Processed 555560 reads in 171.118 CPU sec, 21.337 real sec
[M::process] read 555560 sequences (80000084 bp)...
[M::mem_process_seqs] Processed 555560 reads in 173.541 CPU sec, 21.353 real sec
[M::process] read 555560 sequences (80000269 bp)...
[M::mem_process_seqs] Processed 555560 reads in 174.853 CPU sec, 21.474 real sec
[M::process] read 555558 sequences (80000034 bp)...
[M::mem_process_seqs] Processed 555560 reads in 173.705 CPU sec, 21.347 real sec
[M::process] read 555560 sequences (80000277 bp)...
[M::mem_process_seqs] Processed 555558 reads in 174.279 CPU sec, 21.436 real sec
[M::process] read 555560 sequences (80000241 bp)...
[M::mem_process_seqs] Processed 555560 reads in 173.703 CPU sec, 21.332 real sec
[M::process] read 378673 sequences (54528680 bp)...
[M::mem_process_seqs] Processed 555560 reads in 173.964 CPU sec, 21.413 real sec
[M::mem_process_seqs] Processed 378673 reads in 120.246 CPU sec, 14.822 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG006\tSM:SekiuWA_FG006\tPL:Illumina reference.fasta SekiuWA_FG006.R1.fq.gz
[main] Real time: 168.696 sec; CPU: 1337.765 sec