[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000084 bp)...
[M::process] read 555560 sequences (80000138 bp)...
[M::mem_process_seqs] Processed 555560 reads in 174.840 CPU sec, 21.795 real sec
[M::process] read 555564 sequences (80000193 bp)...
[M::mem_process_seqs] Processed 555560 reads in 177.251 CPU sec, 21.756 real sec
[M::process] read 555562 sequences (80000223 bp)...
[M::mem_process_seqs] Processed 555564 reads in 179.716 CPU sec, 22.147 real sec
[M::process] read 555560 sequences (80000172 bp)...
[M::mem_process_seqs] Processed 555562 reads in 178.577 CPU sec, 21.953 real sec
[M::process] read 555560 sequences (80000207 bp)...
[M::mem_process_seqs] Processed 555560 reads in 178.446 CPU sec, 21.918 real sec
[M::process] read 555560 sequences (80000014 bp)...
[M::mem_process_seqs] Processed 555560 reads in 177.299 CPU sec, 21.791 real sec
[M::process] read 555560 sequences (80000241 bp)...
[M::mem_process_seqs] Processed 555560 reads in 178.225 CPU sec, 21.899 real sec
[M::process] read 2953 sequences (425227 bp)...
[M::mem_process_seqs] Processed 555560 reads in 176.395 CPU sec, 21.855 real sec
[M::mem_process_seqs] Processed 2953 reads in 1.324 CPU sec, 0.163 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG005\tSM:SekiuWA_FG005\tPL:Illumina reference.fasta SekiuWA_FG005.R1.fq.gz
[main] Real time: 181.393 sec; CPU: 1425.164 sec