[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000142 bp)...
[M::process] read 555560 sequences (80000155 bp)...
[M::mem_process_seqs] Processed 555560 reads in 173.860 CPU sec, 21.706 real sec
[M::process] read 555560 sequences (80000079 bp)...
[M::mem_process_seqs] Processed 555560 reads in 175.950 CPU sec, 21.647 real sec
[M::process] read 555560 sequences (80000180 bp)...
[M::mem_process_seqs] Processed 555560 reads in 177.149 CPU sec, 21.751 real sec
[M::process] read 555560 sequences (80000250 bp)...
[M::mem_process_seqs] Processed 555560 reads in 178.470 CPU sec, 21.920 real sec
[M::process] read 555560 sequences (80000259 bp)...
[M::mem_process_seqs] Processed 555560 reads in 177.529 CPU sec, 21.812 real sec
[M::process] read 555558 sequences (80000000 bp)...
[M::mem_process_seqs] Processed 555560 reads in 177.989 CPU sec, 21.866 real sec
[M::process] read 265466 sequences (38226878 bp)...
[M::mem_process_seqs] Processed 555558 reads in 175.843 CPU sec, 21.681 real sec
[M::mem_process_seqs] Processed 265466 reads in 87.569 CPU sec, 10.708 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG004\tSM:SekiuWA_FG004\tPL:Illumina reference.fasta SekiuWA_FG004.R1.fq.gz
[main] Real time: 166.856 sec; CPU: 1326.774 sec