[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555558 sequences (80000002 bp)...
[M::process] read 555558 sequences (80000030 bp)...
[M::mem_process_seqs] Processed 555558 reads in 174.059 CPU sec, 21.711 real sec
[M::process] read 555560 sequences (80000097 bp)...
[M::mem_process_seqs] Processed 555558 reads in 176.207 CPU sec, 21.700 real sec
[M::process] read 555560 sequences (80000279 bp)...
[M::mem_process_seqs] Processed 555560 reads in 175.506 CPU sec, 21.549 real sec
[M::process] read 555558 sequences (80000047 bp)...
[M::mem_process_seqs] Processed 555560 reads in 174.637 CPU sec, 21.447 real sec
[M::process] read 555560 sequences (80000281 bp)...
[M::mem_process_seqs] Processed 555558 reads in 176.715 CPU sec, 21.704 real sec
[M::process] read 555558 sequences (80000075 bp)...
[M::mem_process_seqs] Processed 555560 reads in 173.657 CPU sec, 21.344 real sec
[M::process] read 214433 sequences (30878197 bp)...
[M::mem_process_seqs] Processed 555558 reads in 175.506 CPU sec, 21.666 real sec
[M::mem_process_seqs] Processed 214433 reads in 69.916 CPU sec, 8.527 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG003\tSM:SekiuWA_FG003\tPL:Illumina reference.fasta SekiuWA_FG003.R1.fq.gz
[main] Real time: 162.890 sec; CPU: 1298.499 sec