[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555560 sequences (80000204 bp)...
[M::process] read 555558 sequences (80000032 bp)...
[M::mem_process_seqs] Processed 555560 reads in 175.609 CPU sec, 21.911 real sec
[M::process] read 555560 sequences (80000150 bp)...
[M::mem_process_seqs] Processed 555558 reads in 179.495 CPU sec, 22.082 real sec
[M::process] read 555560 sequences (80000162 bp)...
[M::mem_process_seqs] Processed 555560 reads in 180.634 CPU sec, 22.195 real sec
[M::process] read 555560 sequences (80000230 bp)...
[M::mem_process_seqs] Processed 555560 reads in 180.064 CPU sec, 22.154 real sec
[M::process] read 555558 sequences (80000016 bp)...
[M::mem_process_seqs] Processed 555560 reads in 180.211 CPU sec, 22.166 real sec
[M::process] read 555560 sequences (80000272 bp)...
[M::mem_process_seqs] Processed 555558 reads in 182.304 CPU sec, 22.393 real sec
[M::process] read 555560 sequences (80000204 bp)...
[M::mem_process_seqs] Processed 555560 reads in 179.718 CPU sec, 22.098 real sec
[M::process] read 555560 sequences (80000278 bp)...
[M::mem_process_seqs] Processed 555560 reads in 182.431 CPU sec, 22.441 real sec
[M::process] read 9753 sequences (1404422 bp)...
[M::mem_process_seqs] Processed 555560 reads in 180.669 CPU sec, 22.375 real sec
[M::mem_process_seqs] Processed 9753 reads in 4.671 CPU sec, 0.553 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG002\tSM:SekiuWA_FG002\tPL:Illumina reference.fasta SekiuWA_FG002.R1.fq.gz
[main] Real time: 205.198 sec; CPU: 1628.634 sec