[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555562 sequences (80000231 bp)...
[M::process] read 555560 sequences (80000176 bp)...
[M::mem_process_seqs] Processed 555562 reads in 169.687 CPU sec, 21.161 real sec
[M::process] read 555564 sequences (80000196 bp)...
[M::mem_process_seqs] Processed 555560 reads in 175.673 CPU sec, 21.608 real sec
[M::process] read 555562 sequences (80000125 bp)...
[M::mem_process_seqs] Processed 555564 reads in 175.033 CPU sec, 21.469 real sec
[M::process] read 555560 sequences (80000057 bp)...
[M::mem_process_seqs] Processed 555562 reads in 172.833 CPU sec, 21.208 real sec
[M::process] read 555560 sequences (80000154 bp)...
[M::mem_process_seqs] Processed 555560 reads in 172.090 CPU sec, 21.149 real sec
[M::process] read 555562 sequences (80000200 bp)...
[M::mem_process_seqs] Processed 555560 reads in 173.021 CPU sec, 21.235 real sec
[M::process] read 555560 sequences (80000073 bp)...
[M::mem_process_seqs] Processed 555562 reads in 173.833 CPU sec, 21.358 real sec
[M::process] read 53961 sequences (7770348 bp)...
[M::mem_process_seqs] Processed 555560 reads in 173.249 CPU sec, 21.398 real sec
[M::mem_process_seqs] Processed 53961 reads in 19.560 CPU sec, 2.304 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_FG001\tSM:SekiuWA_FG001\tPL:Illumina reference.fasta SekiuWA_FG001.R1.fq.gz
[main] Real time: 176.343 sec; CPU: 1407.243 sec