[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555794 sequences (80000167 bp)...
[M::process] read 555702 sequences (80000003 bp)...
[M::mem_process_seqs] Processed 555794 reads in 163.584 CPU sec, 20.401 real sec
[M::process] read 287893 sequences (41448422 bp)...
[M::mem_process_seqs] Processed 555702 reads in 168.873 CPU sec, 20.820 real sec
[M::mem_process_seqs] Processed 287893 reads in 89.117 CPU sec, 10.935 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_67\tSM:SekiuWA_67\tPL:Illumina reference.fasta SekiuWA_67.R1.fq.gz
[main] Real time: 55.653 sec; CPU: 423.610 sec