[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555848 sequences (80000063 bp)...
[M::process] read 555738 sequences (80000247 bp)...
[M::mem_process_seqs] Processed 555848 reads in 159.582 CPU sec, 19.883 real sec
[M::process] read 555716 sequences (80000048 bp)...
[M::mem_process_seqs] Processed 555738 reads in 166.031 CPU sec, 20.437 real sec
[M::process] read 441880 sequences (63616450 bp)...
[M::mem_process_seqs] Processed 555716 reads in 166.715 CPU sec, 20.487 real sec
[M::mem_process_seqs] Processed 441880 reads in 133.704 CPU sec, 16.511 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_66\tSM:SekiuWA_66\tPL:Illumina reference.fasta SekiuWA_66.R1.fq.gz
[main] Real time: 81.737 sec; CPU: 628.842 sec