[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556334 sequences (80000184 bp)...
[M::process] read 556102 sequences (80000205 bp)...
[M::mem_process_seqs] Processed 556334 reads in 161.853 CPU sec, 20.138 real sec
[M::process] read 556028 sequences (80000178 bp)...
[M::mem_process_seqs] Processed 556102 reads in 168.043 CPU sec, 20.666 real sec
[M::process] read 162459 sequences (23376014 bp)...
[M::mem_process_seqs] Processed 556028 reads in 167.113 CPU sec, 20.620 real sec
[M::mem_process_seqs] Processed 162459 reads in 52.684 CPU sec, 6.365 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_65\tSM:SekiuWA_65\tPL:Illumina reference.fasta SekiuWA_65.R1.fq.gz
[main] Real time: 70.596 sec; CPU: 551.743 sec