[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555874 sequences (80000169 bp)...
[M::process] read 555766 sequences (80000002 bp)...
[M::mem_process_seqs] Processed 555874 reads in 164.899 CPU sec, 20.525 real sec
[M::process] read 555718 sequences (80000229 bp)...
[M::mem_process_seqs] Processed 555766 reads in 170.552 CPU sec, 20.976 real sec
[M::process] read 14442 sequences (2079172 bp)...
[M::mem_process_seqs] Processed 555718 reads in 172.075 CPU sec, 21.302 real sec
[M::mem_process_seqs] Processed 14442 reads in 6.366 CPU sec, 0.745 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_63\tSM:SekiuWA_63\tPL:Illumina reference.fasta SekiuWA_63.R1.fq.gz
[main] Real time: 68.777 sec; CPU: 516.775 sec