[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555824 sequences (80000022 bp)...
[M::process] read 555718 sequences (80000034 bp)...
[M::mem_process_seqs] Processed 555824 reads in 164.960 CPU sec, 20.552 real sec
[M::process] read 555706 sequences (80000084 bp)...
[M::mem_process_seqs] Processed 555718 reads in 172.337 CPU sec, 21.192 real sec
[M::process] read 555676 sequences (80000093 bp)...
[M::mem_process_seqs] Processed 555706 reads in 172.129 CPU sec, 21.161 real sec
[M::process] read 482132 sequences (69414135 bp)...
[M::mem_process_seqs] Processed 555676 reads in 172.310 CPU sec, 21.163 real sec
[M::mem_process_seqs] Processed 482132 reads in 149.402 CPU sec, 18.449 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_61\tSM:SekiuWA_61\tPL:Illumina reference.fasta SekiuWA_61.R1.fq.gz
[main] Real time: 107.850 sec; CPU: 834.040 sec