[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556338 sequences (80000143 bp)...
[M::process] read 555974 sequences (80000261 bp)...
[M::mem_process_seqs] Processed 556338 reads in 165.371 CPU sec, 20.605 real sec
[M::process] read 555952 sequences (80000203 bp)...
[M::mem_process_seqs] Processed 555974 reads in 170.815 CPU sec, 20.997 real sec
[M::process] read 511427 sequences (73605558 bp)...
[M::mem_process_seqs] Processed 555952 reads in 170.905 CPU sec, 21.005 real sec
[M::mem_process_seqs] Processed 511427 reads in 156.284 CPU sec, 19.318 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_60\tSM:SekiuWA_60\tPL:Illumina reference.fasta SekiuWA_60.R1.fq.gz
[main] Real time: 86.985 sec; CPU: 666.427 sec