[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555858 sequences (80000096 bp)...
[M::process] read 555734 sequences (80000075 bp)...
[M::mem_process_seqs] Processed 555858 reads in 162.632 CPU sec, 20.262 real sec
[M::process] read 555730 sequences (80000164 bp)...
[M::mem_process_seqs] Processed 555734 reads in 169.165 CPU sec, 20.785 real sec
[M::process] read 555690 sequences (80000114 bp)...
[M::mem_process_seqs] Processed 555730 reads in 168.433 CPU sec, 20.669 real sec
[M::process] read 222237 sequences (31995431 bp)...
[M::mem_process_seqs] Processed 555690 reads in 171.391 CPU sec, 21.137 real sec
[M::mem_process_seqs] Processed 222237 reads in 70.520 CPU sec, 8.619 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_59\tSM:SekiuWA_59\tPL:Illumina reference.fasta SekiuWA_59.R1.fq.gz
[main] Real time: 94.553 sec; CPU: 744.418 sec