[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555862 sequences (80000084 bp)...
[M::process] read 555742 sequences (80000049 bp)...
[M::mem_process_seqs] Processed 555862 reads in 161.120 CPU sec, 20.063 real sec
[M::process] read 555736 sequences (80000163 bp)...
[M::mem_process_seqs] Processed 555742 reads in 171.489 CPU sec, 21.092 real sec
[M::process] read 555696 sequences (80000194 bp)...
[M::mem_process_seqs] Processed 555736 reads in 167.980 CPU sec, 20.638 real sec
[M::process] read 443352 sequences (63828690 bp)...
[M::mem_process_seqs] Processed 555696 reads in 169.191 CPU sec, 20.812 real sec
[M::mem_process_seqs] Processed 443352 reads in 135.473 CPU sec, 16.742 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_58\tSM:SekiuWA_58\tPL:Illumina reference.fasta SekiuWA_58.R1.fq.gz
[main] Real time: 104.326 sec; CPU: 808.470 sec