[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555848 sequences (80000258 bp)...
[M::process] read 555742 sequences (80000274 bp)...
[M::mem_process_seqs] Processed 555848 reads in 163.643 CPU sec, 20.400 real sec
[M::process] read 555722 sequences (80000201 bp)...
[M::mem_process_seqs] Processed 555742 reads in 171.963 CPU sec, 21.155 real sec
[M::process] read 555696 sequences (80000093 bp)...
[M::mem_process_seqs] Processed 555722 reads in 171.838 CPU sec, 21.124 real sec
[M::process] read 555672 sequences (80000214 bp)...
[M::mem_process_seqs] Processed 555696 reads in 172.419 CPU sec, 21.158 real sec
[M::process] read 100374 sequences (14451573 bp)...
[M::mem_process_seqs] Processed 555672 reads in 169.809 CPU sec, 20.994 real sec
[M::mem_process_seqs] Processed 100374 reads in 35.459 CPU sec, 4.238 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_57\tSM:SekiuWA_57\tPL:Illumina reference.fasta SekiuWA_57.R1.fq.gz
[main] Real time: 111.386 sec; CPU: 886.873 sec