[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556270 sequences (80000197 bp)...
[M::process] read 555984 sequences (80000264 bp)...
[M::mem_process_seqs] Processed 556270 reads in 165.340 CPU sec, 20.600 real sec
[M::process] read 555950 sequences (80000070 bp)...
[M::mem_process_seqs] Processed 555984 reads in 171.858 CPU sec, 21.166 real sec
[M::process] read 555976 sequences (80000117 bp)...
[M::mem_process_seqs] Processed 555950 reads in 171.193 CPU sec, 21.065 real sec
[M::process] read 555854 sequences (80000051 bp)...
[M::mem_process_seqs] Processed 555976 reads in 173.546 CPU sec, 21.356 real sec
[M::process] read 462936 sequences (66629302 bp)...
[M::mem_process_seqs] Processed 555854 reads in 170.767 CPU sec, 21.012 real sec
[M::mem_process_seqs] Processed 462936 reads in 142.206 CPU sec, 17.552 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_56\tSM:SekiuWA_56\tPL:Illumina reference.fasta SekiuWA_56.R1.fq.gz
[main] Real time: 127.791 sec; CPU: 997.954 sec