[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556206 sequences (80000203 bp)...
[M::process] read 555934 sequences (80000140 bp)...
[M::mem_process_seqs] Processed 556206 reads in 161.651 CPU sec, 20.124 real sec
[M::process] read 555968 sequences (80000012 bp)...
[M::mem_process_seqs] Processed 555934 reads in 168.872 CPU sec, 20.777 real sec
[M::process] read 516978 sequences (74403557 bp)...
[M::mem_process_seqs] Processed 555968 reads in 169.490 CPU sec, 20.861 real sec
[M::mem_process_seqs] Processed 516978 reads in 158.078 CPU sec, 19.567 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_55\tSM:SekiuWA_55\tPL:Illumina reference.fasta SekiuWA_55.R1.fq.gz
[main] Real time: 85.944 sec; CPU: 661.140 sec