[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555822 sequences (80000114 bp)...
[M::process] read 555734 sequences (80000172 bp)...
[M::mem_process_seqs] Processed 555822 reads in 158.195 CPU sec, 19.694 real sec
[M::process] read 555702 sequences (80000063 bp)...
[M::mem_process_seqs] Processed 555734 reads in 165.204 CPU sec, 20.338 real sec
[M::process] read 186209 sequences (26808033 bp)...
[M::mem_process_seqs] Processed 555702 reads in 165.737 CPU sec, 20.476 real sec
[M::mem_process_seqs] Processed 186209 reads in 59.296 CPU sec, 7.241 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_54\tSM:SekiuWA_54\tPL:Illumina reference.fasta SekiuWA_54.R1.fq.gz
[main] Real time: 70.380 sec; CPU: 550.384 sec