[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556236 sequences (80000282 bp)...
[M::process] read 555988 sequences (80000241 bp)...
[M::mem_process_seqs] Processed 556236 reads in 166.221 CPU sec, 20.740 real sec
[M::process] read 555968 sequences (80000268 bp)...
[M::mem_process_seqs] Processed 555988 reads in 172.420 CPU sec, 21.236 real sec
[M::process] read 448984 sequences (64615114 bp)...
[M::mem_process_seqs] Processed 555968 reads in 171.402 CPU sec, 21.084 real sec
[M::mem_process_seqs] Processed 448984 reads in 138.429 CPU sec, 17.119 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_53\tSM:SekiuWA_53\tPL:Illumina reference.fasta SekiuWA_53.R1.fq.gz
[main] Real time: 85.098 sec; CPU: 651.571 sec