[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556290 sequences (80000094 bp)...
[M::process] read 556020 sequences (80000275 bp)...
[M::mem_process_seqs] Processed 556290 reads in 162.154 CPU sec, 20.212 real sec
[M::process] read 555972 sequences (80000100 bp)...
[M::mem_process_seqs] Processed 556020 reads in 167.343 CPU sec, 20.602 real sec
[M::process] read 556010 sequences (80000164 bp)...
[M::mem_process_seqs] Processed 555972 reads in 168.700 CPU sec, 20.750 real sec
[M::process] read 555888 sequences (80000190 bp)...
[M::mem_process_seqs] Processed 556010 reads in 167.479 CPU sec, 20.586 real sec
[M::process] read 422348 sequences (60782465 bp)...
[M::mem_process_seqs] Processed 555888 reads in 168.515 CPU sec, 20.770 real sec
[M::mem_process_seqs] Processed 422348 reads in 129.285 CPU sec, 15.979 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_52\tSM:SekiuWA_52\tPL:Illumina reference.fasta SekiuWA_52.R1.fq.gz
[main] Real time: 123.329 sec; CPU: 966.408 sec