[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555786 sequences (80000241 bp)...
[M::process] read 555696 sequences (80000176 bp)...
[M::mem_process_seqs] Processed 555786 reads in 166.500 CPU sec, 20.728 real sec
[M::process] read 165365 sequences (23807817 bp)...
[M::mem_process_seqs] Processed 555696 reads in 169.359 CPU sec, 20.912 real sec
[M::mem_process_seqs] Processed 165365 reads in 55.065 CPU sec, 6.666 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_51\tSM:SekiuWA_51\tPL:Illumina reference.fasta SekiuWA_51.R1.fq.gz
[main] Real time: 50.968 sec; CPU: 392.758 sec