[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556108 sequences (80000053 bp)...
[M::process] read 555842 sequences (80000179 bp)...
[M::mem_process_seqs] Processed 556108 reads in 158.252 CPU sec, 19.710 real sec
[M::process] read 555798 sequences (80000023 bp)...
[M::mem_process_seqs] Processed 555842 reads in 166.831 CPU sec, 20.513 real sec
[M::process] read 555758 sequences (80000131 bp)...
[M::mem_process_seqs] Processed 555798 reads in 162.861 CPU sec, 20.013 real sec
[M::process] read 329571 sequences (47443432 bp)...
[M::mem_process_seqs] Processed 555758 reads in 162.540 CPU sec, 20.007 real sec
[M::mem_process_seqs] Processed 329571 reads in 100.820 CPU sec, 12.406 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_50\tSM:SekiuWA_50\tPL:Illumina reference.fasta SekiuWA_50.R1.fq.gz
[main] Real time: 96.048 sec; CPU: 753.695 sec