[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555796 sequences (80000191 bp)...
[M::process] read 555836 sequences (80000249 bp)...
[M::mem_process_seqs] Processed 555796 reads in 162.195 CPU sec, 20.206 real sec
[M::process] read 555722 sequences (80000097 bp)...
[M::mem_process_seqs] Processed 555836 reads in 167.503 CPU sec, 20.608 real sec
[M::process] read 555738 sequences (80000196 bp)...
[M::mem_process_seqs] Processed 555722 reads in 167.654 CPU sec, 20.617 real sec
[M::process] read 93302 sequences (13430466 bp)...
[M::mem_process_seqs] Processed 555738 reads in 166.118 CPU sec, 20.550 real sec
[M::mem_process_seqs] Processed 93302 reads in 32.098 CPU sec, 3.777 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_49\tSM:SekiuWA_49\tPL:Illumina reference.fasta SekiuWA_49.R1.fq.gz
[main] Real time: 87.725 sec; CPU: 697.195 sec