[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555826 sequences (80000033 bp)...
[M::process] read 555752 sequences (80000121 bp)...
[M::mem_process_seqs] Processed 555826 reads in 162.318 CPU sec, 20.217 real sec
[M::process] read 555706 sequences (80000044 bp)...
[M::mem_process_seqs] Processed 555752 reads in 170.478 CPU sec, 20.969 real sec
[M::process] read 555710 sequences (80000000 bp)...
[M::mem_process_seqs] Processed 555706 reads in 171.923 CPU sec, 21.072 real sec
[M::process] read 555678 sequences (80000193 bp)...
[M::mem_process_seqs] Processed 555710 reads in 172.307 CPU sec, 21.159 real sec
[M::process] read 555664 sequences (80000053 bp)...
[M::mem_process_seqs] Processed 555678 reads in 173.672 CPU sec, 21.343 real sec
[M::process] read 32035 sequences (4612410 bp)...
[M::mem_process_seqs] Processed 555664 reads in 170.683 CPU sec, 21.115 real sec
[M::mem_process_seqs] Processed 32035 reads in 12.376 CPU sec, 1.447 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_48\tSM:SekiuWA_48\tPL:Illumina reference.fasta SekiuWA_48.R1.fq.gz
[main] Real time: 131.670 sec; CPU: 1036.555 sec