[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555884 sequences (80000231 bp)...
[M::process] read 555766 sequences (80000027 bp)...
[M::mem_process_seqs] Processed 555884 reads in 155.921 CPU sec, 19.417 real sec
[M::process] read 555752 sequences (80000131 bp)...
[M::mem_process_seqs] Processed 555766 reads in 162.171 CPU sec, 19.965 real sec
[M::process] read 555706 sequences (80000171 bp)...
[M::mem_process_seqs] Processed 555752 reads in 162.798 CPU sec, 20.024 real sec
[M::process] read 166701 sequences (23999359 bp)...
[M::mem_process_seqs] Processed 555706 reads in 162.393 CPU sec, 20.087 real sec
[M::mem_process_seqs] Processed 166701 reads in 52.826 CPU sec, 6.420 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_47\tSM:SekiuWA_47\tPL:Illumina reference.fasta SekiuWA_47.R1.fq.gz
[main] Real time: 88.372 sec; CPU: 697.941 sec