[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556074 sequences (80000210 bp)...
[M::process] read 555898 sequences (80000130 bp)...
[M::mem_process_seqs] Processed 556074 reads in 164.551 CPU sec, 20.463 real sec
[M::process] read 555790 sequences (80000081 bp)...
[M::mem_process_seqs] Processed 555898 reads in 173.408 CPU sec, 21.334 real sec
[M::process] read 555780 sequences (80000224 bp)...
[M::mem_process_seqs] Processed 555790 reads in 173.935 CPU sec, 21.361 real sec
[M::process] read 555738 sequences (80000129 bp)...
[M::mem_process_seqs] Processed 555780 reads in 170.021 CPU sec, 20.907 real sec
[M::process] read 555728 sequences (80000076 bp)...
[M::mem_process_seqs] Processed 555738 reads in 174.674 CPU sec, 21.449 real sec
[M::process] read 130742 sequences (18822650 bp)...
[M::mem_process_seqs] Processed 555728 reads in 172.198 CPU sec, 21.305 real sec
[M::mem_process_seqs] Processed 130742 reads in 44.696 CPU sec, 5.380 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_46\tSM:SekiuWA_46\tPL:Illumina reference.fasta SekiuWA_46.R1.fq.gz
[main] Real time: 134.655 sec; CPU: 1075.354 sec