[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556274 sequences (80000155 bp)...
[M::process] read 556014 sequences (80000120 bp)...
[M::mem_process_seqs] Processed 556274 reads in 158.189 CPU sec, 19.711 real sec
[M::process] read 524822 sequences (75530207 bp)...
[M::mem_process_seqs] Processed 556014 reads in 165.521 CPU sec, 20.362 real sec
[M::mem_process_seqs] Processed 524822 reads in 154.172 CPU sec, 19.080 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_45\tSM:SekiuWA_45\tPL:Illumina reference.fasta SekiuWA_45.R1.fq.gz
[main] Real time: 64.128 sec; CPU: 480.825 sec