[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556358 sequences (80000200 bp)...
[M::process] read 556068 sequences (80000064 bp)...
[M::mem_process_seqs] Processed 556358 reads in 154.985 CPU sec, 19.299 real sec
[M::process] read 555900 sequences (80000006 bp)...
[M::mem_process_seqs] Processed 556068 reads in 162.939 CPU sec, 20.066 real sec
[M::process] read 556004 sequences (80000196 bp)...
[M::mem_process_seqs] Processed 555900 reads in 163.796 CPU sec, 20.113 real sec
[M::process] read 555980 sequences (80000272 bp)...
[M::mem_process_seqs] Processed 556004 reads in 162.446 CPU sec, 19.969 real sec
[M::process] read 555872 sequences (80000039 bp)...
[M::mem_process_seqs] Processed 555980 reads in 165.857 CPU sec, 20.377 real sec
[M::process] read 555850 sequences (80000238 bp)...
[M::mem_process_seqs] Processed 555872 reads in 165.721 CPU sec, 20.355 real sec
[M::process] read 237897 sequences (34240881 bp)...
[M::mem_process_seqs] Processed 555850 reads in 163.667 CPU sec, 20.184 real sec
[M::mem_process_seqs] Processed 237897 reads in 73.372 CPU sec, 8.944 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_44\tSM:SekiuWA_44\tPL:Illumina reference.fasta SekiuWA_44.R1.fq.gz
[main] Real time: 152.769 sec; CPU: 1214.961 sec