[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555918 sequences (80000012 bp)...
[M::process] read 555818 sequences (80000095 bp)...
[M::mem_process_seqs] Processed 555918 reads in 158.829 CPU sec, 19.772 real sec
[M::process] read 555758 sequences (80000035 bp)...
[M::mem_process_seqs] Processed 555818 reads in 164.473 CPU sec, 20.222 real sec
[M::process] read 555760 sequences (80000012 bp)...
[M::mem_process_seqs] Processed 555758 reads in 166.852 CPU sec, 20.476 real sec
[M::process] read 555748 sequences (80000109 bp)...
[M::mem_process_seqs] Processed 555760 reads in 165.977 CPU sec, 20.372 real sec
[M::process] read 555724 sequences (80000242 bp)...
[M::mem_process_seqs] Processed 555748 reads in 168.533 CPU sec, 20.681 real sec
[M::process] read 236051 sequences (33982349 bp)...
[M::mem_process_seqs] Processed 555724 reads in 164.746 CPU sec, 20.321 real sec
[M::mem_process_seqs] Processed 236051 reads in 74.429 CPU sec, 9.095 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_43\tSM:SekiuWA_43\tPL:Illumina reference.fasta SekiuWA_43.R1.fq.gz
[main] Real time: 133.823 sec; CPU: 1065.901 sec