[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556296 sequences (80000079 bp)...
[M::process] read 555978 sequences (80000126 bp)...
[M::mem_process_seqs] Processed 556296 reads in 163.858 CPU sec, 20.431 real sec
[M::process] read 556028 sequences (80000174 bp)...
[M::mem_process_seqs] Processed 555978 reads in 170.246 CPU sec, 20.941 real sec
[M::process] read 555916 sequences (80000278 bp)...
[M::mem_process_seqs] Processed 556028 reads in 170.462 CPU sec, 20.917 real sec
[M::process] read 283917 sequences (40859508 bp)...
[M::mem_process_seqs] Processed 555916 reads in 170.825 CPU sec, 21.050 real sec
[M::mem_process_seqs] Processed 283917 reads in 89.165 CPU sec, 10.926 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_41\tSM:SekiuWA_41\tPL:Illumina reference.fasta SekiuWA_41.R1.fq.gz
[main] Real time: 97.816 sec; CPU: 766.983 sec