[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556166 sequences (80000172 bp)...
[M::process] read 555958 sequences (80000022 bp)...
[M::mem_process_seqs] Processed 556166 reads in 155.694 CPU sec, 19.388 real sec
[M::process] read 555906 sequences (80000127 bp)...
[M::mem_process_seqs] Processed 555958 reads in 160.308 CPU sec, 19.717 real sec
[M::process] read 268318 sequences (38616716 bp)...
[M::mem_process_seqs] Processed 555906 reads in 160.445 CPU sec, 19.796 real sec
[M::mem_process_seqs] Processed 268318 reads in 81.551 CPU sec, 9.958 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_39\tSM:SekiuWA_39\tPL:Illumina reference.fasta SekiuWA_39.R1.fq.gz
[main] Real time: 72.021 sec; CPU: 560.245 sec