[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 555834 sequences (80000210 bp)...
[M::process] read 555736 sequences (80000092 bp)...
[M::mem_process_seqs] Processed 555834 reads in 159.208 CPU sec, 19.833 real sec
[M::process] read 555720 sequences (80000246 bp)...
[M::mem_process_seqs] Processed 555736 reads in 165.584 CPU sec, 20.363 real sec
[M::process] read 555678 sequences (80000169 bp)...
[M::mem_process_seqs] Processed 555720 reads in 165.534 CPU sec, 20.340 real sec
[M::process] read 152252 sequences (21919961 bp)...
[M::mem_process_seqs] Processed 555678 reads in 165.036 CPU sec, 20.363 real sec
[M::mem_process_seqs] Processed 152252 reads in 49.004 CPU sec, 5.912 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_38\tSM:SekiuWA_38\tPL:Illumina reference.fasta SekiuWA_38.R1.fq.gz
[main] Real time: 89.102 sec; CPU: 706.108 sec