[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556386 sequences (80000108 bp)...
[M::process] read 556076 sequences (80000148 bp)...
[M::mem_process_seqs] Processed 556386 reads in 156.698 CPU sec, 19.521 real sec
[M::process] read 556094 sequences (80000064 bp)...
[M::mem_process_seqs] Processed 556076 reads in 164.976 CPU sec, 20.261 real sec
[M::process] read 555980 sequences (80000048 bp)...
[M::mem_process_seqs] Processed 556094 reads in 163.756 CPU sec, 20.101 real sec
[M::process] read 289565 sequences (41667317 bp)...
[M::mem_process_seqs] Processed 555980 reads in 162.544 CPU sec, 20.020 real sec
[M::mem_process_seqs] Processed 289565 reads in 90.016 CPU sec, 11.049 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_37\tSM:SekiuWA_37\tPL:Illumina reference.fasta SekiuWA_37.R1.fq.gz
[main] Real time: 94.410 sec; CPU: 740.309 sec