[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M::process] read 556038 sequences (80000268 bp)...
[M::process] read 555788 sequences (80000150 bp)...
[M::mem_process_seqs] Processed 556038 reads in 163.416 CPU sec, 20.363 real sec
[M::process] read 555754 sequences (80000132 bp)...
[M::mem_process_seqs] Processed 555788 reads in 170.003 CPU sec, 20.903 real sec
[M::process] read 481794 sequences (69357977 bp)...
[M::mem_process_seqs] Processed 555754 reads in 171.835 CPU sec, 21.127 real sec
[M::mem_process_seqs] Processed 481794 reads in 146.286 CPU sec, 18.067 real sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa mem -L 20,5 -t 8 -a -M -T 10 -A 1 -B 4 -O 6 -R @RG\tID:SekiuWA_36\tSM:SekiuWA_36\tPL:Illumina reference.fasta SekiuWA_36.R1.fq.gz
[main] Real time: 85.280 sec; CPU: 654.324 sec