WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2810748 total bases: 404747712 Q20 bases: 393942524(97.3304%) Q30 bases: 372562038(92.048%) Read1 after filtering: total reads: 2809480 total bases: 404221874 Q20 bases: 393757905(97.4113%) Q30 bases: 372465729(92.1439%) Filtering result: reads passed filter: 2809480 reads failed due to low quality: 628 reads failed due to too many N: 640 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 79.3243% JSON report: SewardAK_320.json HTML report: SewardAK_320.html fastp -i SewardAK_320.F.fq.gz -o SewardAK_320.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j SewardAK_320.json -h SewardAK_320.html fastp v0.20.0, time used: 34 seconds