WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2542559 total bases: 366128496 Q20 bases: 356464385(97.3605%) Q30 bases: 337746568(92.2481%) Read1 after filtering: total reads: 2541675 total bases: 365670777 Q20 bases: 356314312(97.4413%) Q30 bases: 337672472(92.3433%) Filtering result: reads passed filter: 2541675 reads failed due to low quality: 351 reads failed due to too many N: 533 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 92.5419% JSON report: SewardAK_306.json HTML report: SewardAK_306.html fastp -i SewardAK_306.F.fq.gz -o SewardAK_306.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j SewardAK_306.json -h SewardAK_306.html fastp v0.20.0, time used: 30 seconds