WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2251157 total bases: 324166608 Q20 bases: 315337831(97.2765%) Q30 bases: 298244236(92.0034%) Read1 after filtering: total reads: 2250186 total bases: 323814266 Q20 bases: 315206321(97.3417%) Q30 bases: 298170414(92.0807%) Filtering result: reads passed filter: 2250186 reads failed due to low quality: 470 reads failed due to too many N: 501 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 91.3866% JSON report: SewardAK_304.json HTML report: SewardAK_304.html fastp -i SewardAK_304.F.fq.gz -o SewardAK_304.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j SewardAK_304.json -h SewardAK_304.html fastp v0.20.0, time used: 30 seconds