WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 2181801 total bases: 314179344 Q20 bases: 305961140(97.3842%) Q30 bases: 290020422(92.3105%) Read1 after filtering: total reads: 2181100 total bases: 313750581 Q20 bases: 305825978(97.4742%) Q30 bases: 289957341(92.4165%) Filtering result: reads passed filter: 2181100 reads failed due to low quality: 229 reads failed due to too many N: 472 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 93.43% JSON report: SewardAK_302.json HTML report: SewardAK_302.html fastp -i SewardAK_302.F.fq.gz -o SewardAK_302.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j SewardAK_302.json -h SewardAK_302.html fastp v0.20.0, time used: 29 seconds