WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 3828189 total bases: 551259216 Q20 bases: 540392169(98.0287%) Q30 bases: 523651206(94.9918%) Read1 after filtering: total reads: 3824279 total bases: 550693801 Q20 bases: 539988605(98.0561%) Q30 bases: 523307454(95.0269%) Filtering result: reads passed filter: 3824279 reads failed due to low quality: 845 reads failed due to too many N: 3065 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 84.28% JSON report: SekiuWA_FG016.json HTML report: SekiuWA_FG016.html fastp -i SekiuWA_FG016.F.fq.gz -o SekiuWA_FG016.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j SekiuWA_FG016.json -h SekiuWA_FG016.html fastp v0.20.0, time used: 41 seconds