WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 3122602
total bases: 449654688
Q20 bases: 436750430(97.1302%)
Q30 bases: 411652625(91.5486%)

Read1 after filtering:
total reads: 3121071
total bases: 449064787
Q20 bases: 436525052(97.2076%)
Q30 bases: 411526777(91.6408%)

Filtering result:
reads passed filter: 3121071
reads failed due to low quality: 621
reads failed due to too many N: 910
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 88.7722%

JSON report: MontereyBayCA_445.json
HTML report: MontereyBayCA_445.html

fastp -i MontereyBayCA_445.F.fq.gz -o MontereyBayCA_445.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_445.json -h MontereyBayCA_445.html 
fastp v0.20.0, time used: 37 seconds