WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2685945
total bases: 386776080
Q20 bases: 375775355(97.1558%)
Q30 bases: 355296287(91.861%)

Read1 after filtering:
total reads: 2684993
total bases: 386126274
Q20 bases: 375585294(97.2701%)
Q30 bases: 355220265(91.9959%)

Filtering result:
reads passed filter: 2684993
reads failed due to low quality: 419
reads failed due to too many N: 533
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 88.2218%

JSON report: MontereyBayCA_435.json
HTML report: MontereyBayCA_435.html

fastp -i MontereyBayCA_435.F.fq.gz -o MontereyBayCA_435.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_435.json -h MontereyBayCA_435.html 
fastp v0.20.0, time used: 32 seconds