WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 1765460
total bases: 254226240
Q20 bases: 247331053(97.2878%)
Q30 bases: 233070734(91.6785%)

Read1 after filtering:
total reads: 1764629
total bases: 254045857
Q20 bases: 247234715(97.3189%)
Q30 bases: 233000524(91.7159%)

Filtering result:
reads passed filter: 1764629
reads failed due to low quality: 307
reads failed due to too many N: 524
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 87.1297%

JSON report: MontereyBayCA_428.json
HTML report: MontereyBayCA_428.html

fastp -i MontereyBayCA_428.F.fq.gz -o MontereyBayCA_428.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_428.json -h MontereyBayCA_428.html 
fastp v0.20.0, time used: 25 seconds