WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2373606
total bases: 341799264
Q20 bases: 333102617(97.4556%)
Q30 bases: 315753022(92.3797%)

Read1 after filtering:
total reads: 2372713
total bases: 341517782
Q20 bases: 332984990(97.5015%)
Q30 bases: 315678059(92.4339%)

Filtering result:
reads passed filter: 2372713
reads failed due to low quality: 352
reads failed due to too many N: 541
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 92.5622%

JSON report: MontereyBayCA_417.json
HTML report: MontereyBayCA_417.html

fastp -i MontereyBayCA_417.F.fq.gz -o MontereyBayCA_417.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_417.json -h MontereyBayCA_417.html 
fastp v0.20.0, time used: 30 seconds