WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 1955506
total bases: 281592864
Q20 bases: 273972195(97.2937%)
Q30 bases: 259705275(92.2272%)

Read1 after filtering:
total reads: 1954895
total bases: 281340869
Q20 bases: 273880372(97.3482%)
Q30 bases: 259653082(92.2913%)

Filtering result:
reads passed filter: 1954895
reads failed due to low quality: 226
reads failed due to too many N: 385
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 92.153%

JSON report: MontereyBayCA_416.json
HTML report: MontereyBayCA_416.html

fastp -i MontereyBayCA_416.F.fq.gz -o MontereyBayCA_416.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_416.json -h MontereyBayCA_416.html 
fastp v0.20.0, time used: 26 seconds