WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2188087
total bases: 315084528
Q20 bases: 306597295(97.3064%)
Q30 bases: 290300449(92.1341%)

Read1 after filtering:
total reads: 2187261
total bases: 314731067
Q20 bases: 306471560(97.3757%)
Q30 bases: 290233257(92.2163%)

Filtering result:
reads passed filter: 2187261
reads failed due to low quality: 352
reads failed due to too many N: 474
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 93.1504%

JSON report: MontereyBayCA_415.json
HTML report: MontereyBayCA_415.html

fastp -i MontereyBayCA_415.F.fq.gz -o MontereyBayCA_415.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_415.json -h MontereyBayCA_415.html 
fastp v0.20.0, time used: 29 seconds