WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2908555
total bases: 418831920
Q20 bases: 408426445(97.5156%)
Q30 bases: 387454222(92.5083%)

Read1 after filtering:
total reads: 2907580
total bases: 418367083
Q20 bases: 408263414(97.585%)
Q30 bases: 387366320(92.5901%)

Filtering result:
reads passed filter: 2907580
reads failed due to low quality: 317
reads failed due to too many N: 658
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 92.7096%

JSON report: MontereyBayCA_412.json
HTML report: MontereyBayCA_412.html

fastp -i MontereyBayCA_412.F.fq.gz -o MontereyBayCA_412.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_412.json -h MontereyBayCA_412.html 
fastp v0.20.0, time used: 35 seconds