WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2075790
total bases: 298913760
Q20 bases: 290982844(97.3468%)
Q30 bases: 275476058(92.159%)

Read1 after filtering:
total reads: 2075123
total bases: 298501498
Q20 bases: 290854376(97.4382%)
Q30 bases: 275418642(92.2671%)

Filtering result:
reads passed filter: 2075123
reads failed due to low quality: 244
reads failed due to too many N: 423
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 93.0416%

JSON report: MontereyBayCA_409.json
HTML report: MontereyBayCA_409.html

fastp -i MontereyBayCA_409.F.fq.gz -o MontereyBayCA_409.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_409.json -h MontereyBayCA_409.html 
fastp v0.20.0, time used: 28 seconds