WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 2689406
total bases: 387274464
Q20 bases: 376498692(97.2175%)
Q30 bases: 356294123(92.0004%)

Read1 after filtering:
total reads: 2688458
total bases: 386601500
Q20 bases: 376304862(97.3366%)
Q30 bases: 356218821(92.1411%)

Filtering result:
reads passed filter: 2688458
reads failed due to low quality: 415
reads failed due to too many N: 533
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 87.2421%

JSON report: MontereyBayCA_406.json
HTML report: MontereyBayCA_406.html

fastp -i MontereyBayCA_406.F.fq.gz -o MontereyBayCA_406.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_406.json -h MontereyBayCA_406.html 
fastp v0.20.0, time used: 33 seconds