WARNING: cut_by_quality5 is deprecated, please use cut_front instead.
Detecting adapter sequence for read1...
No adapter detected for read1

Read1 before filtering:
total reads: 1840260
total bases: 264997440
Q20 bases: 258160109(97.4199%)
Q30 bases: 244502675(92.2661%)

Read1 after filtering:
total reads: 1839638
total bases: 264788146
Q20 bases: 258072955(97.4639%)
Q30 bases: 244446781(92.3179%)

Filtering result:
reads passed filter: 1839638
reads failed due to low quality: 200
reads failed due to too many N: 422
reads failed due to too short: 0
reads with adapter trimmed: 0
bases trimmed due to adapters: 0

Duplication rate (may be overestimated since this is SE data): 91.7287%

JSON report: MontereyBayCA_405.json
HTML report: MontereyBayCA_405.html

fastp -i MontereyBayCA_405.F.fq.gz -o MontereyBayCA_405.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j MontereyBayCA_405.json -h MontereyBayCA_405.html 
fastp v0.20.0, time used: 26 seconds