WARNING: cut_by_quality5 is deprecated, please use cut_front instead. Detecting adapter sequence for read1... No adapter detected for read1 Read1 before filtering: total reads: 1916557 total bases: 275984208 Q20 bases: 261004998(94.5724%) Q30 bases: 238656359(86.4746%) Read1 after filtering: total reads: 1915773 total bases: 274900011 Q20 bases: 260760284(94.8564%) Q30 bases: 238616650(86.8013%) Filtering result: reads passed filter: 1915773 reads failed due to low quality: 548 reads failed due to too many N: 236 reads failed due to too short: 0 reads with adapter trimmed: 0 bases trimmed due to adapters: 0 Duplication rate (may be overestimated since this is SE data): 61.7618% JSON report: DabobBayWA_Q364.json HTML report: DabobBayWA_Q364.html fastp -i DabobBayWA_Q364.F.fq.gz -o DabobBayWA_Q364.R1.fq.gz --cut_by_quality5 20 --cut_by_quality3 20 --cut_window_size 5 --cut_mean_quality 15 -q 15 -u 50 -j DabobBayWA_Q364.json -h DabobBayWA_Q364.html fastp v0.20.0, time used: 28 seconds